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Bacy

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What data should you label to get the most value for your money?

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Machine Learning for detection of early onset of Alzheimers

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ADDI Alzheimers Detection Challenge

Out of Space Issue

Almost 3 years ago

Thank you very much! It works!

Out of Space Issue

Almost 3 years ago

We only have 10G in the linux virtual machine under /home

And conda iteself takes 5.6G.

So, it is very easy to use all the space. Any way to work around it or can we request more space?

Submission Script Bug: Failed if assets director has subdirectory

Almost 3 years ago

Thanks. I found the error.

I changed the “# Submit to AIcrowd” to “### Submit to AIcrowd”

Which caused the submission notebook recurision.

Submission Script Bug: Failed if assets director has subdirectory

Almost 3 years ago

The submission script will create submission subfolder forever until all disk space is exhausted.

To reproducce

create the following director and then submit

  • assets/
    • model1/
      -model1.pkl
      -model2/
      -model2.pkl
      learner.pkl

Submission Error: Operation not permitted

Almost 3 years ago

Never mind. Looks like there are errors in my notebook. The dependency is removed after the notebook splits to train, test.

Submission Error: Operation not permitted

Almost 3 years ago

OS: #41~18.04.1-Ubuntu SMP Mon Jan 18 14:00:01 UTC 2021
Python 3.8.5

Error message is below:

Using notebook: /home/desktop0/files/baseline.ipynb for submission…
Removing existing files from submission directory…
Scrubbing API keys from the notebook…
Collecting notebook…
╭───────────────────── Traceback (most recent call last) ──────────────────────╮
│ /home/desktop0/conda/bin/aicrowd:8 in │
│ │
│ 5 from aicrowd.cli import cli │
│ 6 if name == ‘main’: │
│ 7 │ sys.argv[0] = re.sub(r’(-script.pyw|.exe)?$’, ‘’, sys.argv[0]) │
│ ❱ 8 │ sys.exit(cli()) │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/click/core.py:829 in │
call
│ │
│ 826 │ │
│ 827 │ def call(self, *args, **kwargs): │
│ 828 │ │ “”“Alias for :meth:main.”"" │
│ ❱ 829 │ │ return self.main(*args, **kwargs) │
│ 830 │
│ 831 │
│ 832 class Command(BaseCommand): │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/click/core.py:782 in main │
│ │
│ 779 │ │ try: │
│ 780 │ │ │ try: │
│ 781 │ │ │ │ with self.make_context(prog_name, args, **extra) as c │
│ ❱ 782 │ │ │ │ │ rv = self.invoke(ctx) │
│ 783 │ │ │ │ │ if not standalone_mode: │
│ 784 │ │ │ │ │ │ return rv │
│ 785 │ │ │ │ │ # it’s not safe to ctx.exit(rv) here! │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/click/core.py:1259 in │
│ invoke │
│ │
│ 1256 │ │ │ │ Command.invoke(self, ctx) │
│ 1257 │ │ │ │ sub_ctx = cmd.make_context(cmd_name, args, parent=ctx │
│ 1258 │ │ │ │ with sub_ctx: │
│ ❱ 1259 │ │ │ │ │ return _process_result(sub_ctx.command.invoke(sub │
│ 1260 │ │ │
│ 1261 │ │ # In chain mode we create the contexts step by step, but afte │
│ 1262 │ │ # base command has been invoked. Because at that point we do │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/click/core.py:1259 in │
│ invoke │
│ │
│ 1256 │ │ │ │ Command.invoke(self, ctx) │
│ 1257 │ │ │ │ sub_ctx = cmd.make_context(cmd_name, args, parent=ctx │
│ 1258 │ │ │ │ with sub_ctx: │
│ ❱ 1259 │ │ │ │ │ return _process_result(sub_ctx.command.invoke(sub │
│ 1260 │ │ │
│ 1261 │ │ # In chain mode we create the contexts step by step, but afte │
│ 1262 │ │ # base command has been invoked. Because at that point we do │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/click/core.py:1066 in │
│ invoke │
│ │
│ 1063 │ │ “”" │
│ 1064 │ │ _maybe_show_deprecated_notice(self) │
│ 1065 │ │ if self.callback is not None: │
│ ❱ 1066 │ │ │ return ctx.invoke(self.callback, **ctx.params) │
│ 1067 │
│ 1068 │
│ 1069 class MultiCommand(Command): │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/click/core.py:610 in invoke │
│ │
│ 607 │ │ args = args[2:] │
│ 608 │ │ with augment_usage_errors(self): │
│ 609 │ │ │ with ctx: │
│ ❱ 610 │ │ │ │ return callback(*args, **kwargs) │
│ 611 │ │
│ 612 │ def forward(*args, **kwargs): # noqa: B902 │
│ 613 │ │ “”“Similar to :meth:invoke but fills in default keyword │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/aicrowd/cmd/notebook.py:101 │
│ in submit_subcommand │
│ │
│ 98 │ from aicrowd.notebook.submit import create_submission │
│ 99 │ │
│ 100 │ try: │
│ ❱ 101 │ │ create_submission( │
│ 102 │ │ │ challenge, │
│ 103 │ │ │ description, │
│ 104 │ │ │ assets_dir, │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/aicrowd/notebook/submit.py: │
│ 87 in create_submission │
│ │
│ 84 │ no_verify: bool = False, │
│ 85 │ dry_run: bool = False, │
│ 86 ): │
│ ❱ 87 │ bundle_submission(assets_dir, submission_zip_path, notebook_name) │
│ 88 │ if not no_verify: │
│ 89 │ │ verify_submission() │
│ 90 │ if not dry_run: │
│ │
│ /home/desktop0/conda/lib/python3.8/site-packages/aicrowd/notebook/submit.py: │
│ 73 in bundle_submission │
│ │
│ 70 │ # Copy the original notebook │
│ 71 │ # bundle_notebook(submission_zip_path, notebook_name) │
│ 72 │ # Copy assets │
│ ❱ 73 │ shutil.copytree(assets_dir, os.path.join(SUBMISSION_DIR, assets_dir │
│ 74 │ # Zip everything │
│ 75 │ shutil.make_archive(submission_zip_path.replace(”.zip", “”), “zip”, │
│ │
│ /home/desktop0/conda/lib/python3.8/shutil.py:554 in copytree │
│ │
│ 551 │ sys.audit(“shutil.copytree”, src, dst) │
│ 552 │ with os.scandir(src) as itr: │
│ 553 │ │ entries = list(itr) │
│ ❱ 554 │ return _copytree(entries=entries, src=src, dst=dst, symlinks=syml │
│ 555 │ │ │ │ │ ignore=ignore, copy_function=copy_function, │
│ 556 │ │ │ │ │ ignore_dangling_symlinks=ignore_dangling_symlink │
│ 557 │ │ │ │ │ dirs_exist_ok=dirs_exist_ok) │
│ │
│ /home/desktop0/conda/lib/python3.8/shutil.py:510 in _copytree │
│ │
│ 507 │ │ if getattr(why, ‘winerror’, None) is None: │
│ 508 │ │ │ errors.append((src, dst, str(why))) │
│ 509 │ if errors: │
│ ❱ 510 │ │ raise Error(errors) │
│ 511 │ return dst │
│ 512 │
│ 513 def copytree(src, dst, symlinks=False, ignore=None, copy_function=cop │
╰──────────────────────────────────────────────────────────────────────────────╯
Error: [(‘assets/model.zip’, ‘/files/submission/assets/model.zip’, ‘[Errno 1]
Operation not permitted’), (‘assets’, ‘/files/submission/assets’, ‘[Errno 1]
Operation not permitted’)]

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