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Novartis DSAI Challenge

How to use conda-forge or CRAN for packages in evaluation?

About 5 years ago

@bjoern.holzhauer Hi Bjoern were you successful in using glmnet during evaluation by adding - r-glmnet 2.0_16 to the environment.yml file? Thx.

RAW DATA now available in shared folder

About 5 years ago

Thanks for making the raw data available in this more approachable manner. Is there a way to share the data dictionary of the raw data, or instructions on how to get the data dictionary through Informa API?

I ask because the master data dictionary provided under β€œResources” is not complete. Many variables’ descriptions are missing or not informative. Examples:

  • β€œstrTerminationReason”: what does is mean when this variable is β€œβ€ (empty string)?

  • β€œTherapyDescription”, β€œstrStudyDesign”, β€œstrPrimaryEndpoint”, β€œstrPatientPopulation”, β€œDrugDeliveryRouteDescription”: all missing variable description.

It’d be helpful if we could know how are these variables collected: free text in some trial registry? Or hopefully some more structured meta-data with which we could engineer some features out of the long text values. e.g. we want to create a new endpoint category: biomarker, survival, etc.

  • β€œintpriorapproval”: missing description. What do β€œ[]” and β€œ[0]” mean?

  • β€œdrugCountryName”: missing description, not in the script documentation, and are all a big string separated by β€œ|” for all rows (see screenshot below)

Copy/Paste into the workspace example:

About 5 years ago

This link seems to direct to an XML file and it says β€œAccessDenied”.

What is being evaluated during submission?

About 5 years ago

Is the predict.R or predict.py script run in the queue when we submit a solution through SSH? If that’s the case, how do we know where is the test dataset in the evaluation environment?

Also, is there a way to get the log file when the GitLab issue says evaluation is failed to debug what might have been wrong?

Thanks.

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